Our mission is to explore and investigate all the various aspects of magnetic resonance (MR) research in medicine. We serve as a research resource for members of the Department of Radiology, the Johns Hopkins Hospital and the community. We invite and encourage research innovation, as well as collaboration at the local, national and international level, and work to provide state-of-the-art technology to researchers and clinicians.
The division’s focus is the development of novel MR methods and their application in biomedicine.
The Division of MR Research includes faculty, staff, and technical personnel, who provide research training, implementation and support for the mission of the Division.
Director, Peter B. Barker, D. Phil
MR Research Areas
MR Research Areas
Cardiac and Interventional MR
The Cardiac and Interventional MR section has projects to develop miniaturized MR detectors on guidewires for endoscopic MRI at ≤100μm resolution and precision-guided high-frequency intravascular ultrasound ablation. High-speed intravascular MRI methods for imaging vessel disease at ~10 fr/sec are being developed, along with precision MRI-guided interventional procedures that could treat obesity and cancer. Ongoing MR spectroscopy (MRS) studies of cardiac energetics in heart failure patients are underway in collaboration with investigators in the Division of Cardiology.
Our Team
Parag Karmarkar, MS
Cindy Maranto
Caroline Melia
Areeb Siddiqui, MD
Neuroscience
The Neuroscience section is focused on the development of novel MRI technologies and their application to basic science problems and clinical disease, especially in the brain. Methods have been and are being developed for (1) MRS and MRS imaging (MRSI); (2) diffusion tensor imaging (DTI) and axonal mapping; (3) physiological imaging (blood flow, blood volume, and blood oxygenation); (4) Molecular imaging, especially the study of biochemicals and their interactions using magnetization transfer processes; (5) Magnetic susceptibility mapping and fiber tracking using susceptibility tensor information.
Several faculty members of this large section are engaged in the development of new technologies for high-field MRI, including novel biodegradable contrast agents (sugar and proteins), molecular imaging markers, and new endogenous contrast agents for distinguishing tumors from healthy tissue.
Our Team
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Peter C. Van Zijl, PhD
- Chief, Neuroscience, Division of MR Research, Department of Radiology and Radiological Science
Joe Gillen, B.S.
Kazi Akhter, B.S.
Adnan Bibic, Ph.D.
Yuguo Li
Cellular Imaging
The Cellular Imaging section is located in the Institute for Cell Engineering. We engineer cells so they can be detected with non-invasive imaging techniques such as magnetic resonance imaging and magnetic particle imaging. Our primary mission is to develop new magnetic tracers and cell labeling procedures to study the fate of therapeutic stem cells and immune cells after injection, also known as “cell tracking”.
We have been part of several clinical studies performed around the world, using cell labeling techniques developed in our lab. Targets of cell therapy include dysmyelination, multiple sclerosis, cancer, spinal cord injury, stroke, and diabetes. We use cell scaffolds and hydrogels to embed our cells for optimal survival post-transplantation and are able to visualize the biodegradation of these gels in vivo, with applications in regenerative medicine. Finally, we develop novel MRI contrast agents and theranostics with clinical applicability. These include both metallic (i.e. paramagnetic) and non-metallic (i.e. diaCEST) agents, and fluorinated tracers and capsules for 19F MRI and 19F iCEST MRI.
Our Team
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Jeff W. Bulte, MS PhD
- Director of Cellular Imaging, The Johns Hopkins Institute for Cell Engineering
- Professor of Radiology and Radiological Science
Jose Delgado
Imman Hosseini, Ph.D.
Asif Itoo, Ph.D.
Kritika Sood, Ph.D.
Heng Zhao
Janani Gurumurthy
Junpyo Kim
Neurofunction
Research in the Neurofunction section is focused on the development of novel MRI techniques to evaluate the brain's physiology, function, metabolism, and structure, as well as their clinical applications. Our work spans across humans to animal models and ranges from neonates to elderly individuals. Our central goal is to develop translatable MRI tools as candidate biomarkers in neurologic and psychiatric diseases.
Representative techniques that our team is actively developing include T2-Relaxation-Under-Spin-Tagging (TRUST) to measure oxygenation and oxidative metabolism, cerebrovascular reactivity (CVR) to evaluate the brain’s vascular reserve, water extraction with phase contrast arterial spin tagging (WEPCAST) for non-contrast assessment of BBB permeability, MR fingerprinting arterial spin labeling (MRF-ASL) for multi-parametric hemodynamic imaging, and brain atlases in special populations such as pediatric patients. Our team is looking forward to opportunities of collaboration and welcomes inquiries or requests of our techniques.
Our Team
Kaisha Hazel
George Pottanat, MS
Cuimei Xu, MS
Zhiliang Wei, Ph.D.
Xiuli Yang, PhD
Kumiko Oishi, PhD
Ebony Jones, MPH
Xin Li, PhD
Jill Chotiyanonta, MS
Ziyang Xu
Julia Suconic, BS
Tyler Deane
Dinil Sasi Sankaralayam, PhD
Neurometabolism
Research in the Neurometabolism section is focused on the development of novel MRS techniques to measure metabolite levels in the brain, as well as their neuroscience applications. Our work ranges from acquisition to analysis, and from neonates to elderly individuals. Our central goal is to develop tools that make MRS accessible to the non-expert user for applications in clinical and neuroscience applications.
We develop the open-source post-processing and modeling toolkit Osprey, which allows us to advance linear combination modeling of traditional MRS and MRSI data, as well as to develop analyses for the novel acquisition pulse sequence that our group develops. We pioneered the approach of Hadamard-encoded J-difference editing with the HERMES and HERCULES techniques, which allow edited detection of multiple metabolites in a single experiment. We are leading the application of our methods in the HEALthy Baby and Childhood Development (HBCD) study, a national longitudinal study of over 7,000 babies at 25 sites across the US. Our team is looking forward to opportunities of collaboration and welcomes inquiries or requests of our techniques.
Our Team
Ipek Ozdemir, Ph.D.
Aaron T. Gudmundson, Ph.D.
Yulu Song, M.D.
Saipavitra Murali-Manohar, Ph.D.
Gizeaddis L. Simegn, Ph.D.
Zahra Shams, Ph.D.
Christopher William Davies-Jenkins, Ph.D.
Dunja Simicic, Ph.D.
Dillip Senapati, PhD
Abdelrahman Gad, M.D.
Moyoko Tomiyasu, PhD
MR Recent Updates
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Professors Bottomley, Kraitchman, Bulte, van Zijl, Mori, and Lu are all fellows of the International Society for Magnetic Resonance in Medicine (ISMRM) and distinguished Investigators of the Academy of Radiology Research.
Professors Bottomley, van Zijl, Bulte, and Mori are also ISMRM gold medal recipients for their contributions to the field of MR in Medicine; Professors Bottomley, van Zijl and Bulte are recognized by medals from other international/national professional societies; and Professor Kraitchman is also a Fellow of the American College of Cardiology.
Pictured: Four Gold Medalists of the International Society of Magnetic Resonance in Medicine in the Division of MR Research, Dec 2013. Left to right: William Edelstein (1944-2014), Jeff Bulte, Paul Bottomley, and Peter van Zijl
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The division holds an annual retreat at an off-site location, where division members can enjoy a break from routine scheduling demands for a few days. The goals of the retreat are to promote cross-fertilization and communication among the various people in the division, with the hope that new ventures will arise; to provide constructive feedback on research directions and progress; and to provide a relaxed and informal environment where issues can be raised and discussed for further action. The retreat has been held at locations such as the Chesapeake Beach Resort in Chesapeake Beach, MD., Berkeley Springs, WV, St. Michaels, MD, Gettysburg, PA, and in Harpers Ferry, WV, where the group enjoyed a white-water rafting trip. A record number of guests attend the retreat each year.

MR Research Contact Information
The Division of MR Research occupies several thousand square feet of space in many different areas of the Johns Hopkins East Baltimore campus. Contact is best established with the specific Division member whose research endeavors and projects are most germane to your interests.
Johns Hopkins University
Department of Radiology
600 N. Wolf Street, Park 311
Baltimore, MD 21287
Phone: 410-955-6500
Fax: 410-614-1977