The Kunisaki lab is a NIH-funded regenerative medicine group within the Division of General Pediatric Surgery at Johns Hopkins that works at the interface of stem cells, mechanobiology, and materials science. We seek to understand how biomaterials and mechanical forces affect developing tissues relevant to pediatric surgical disorders. To accomplish these aims, we take a developmental biology approach using induced pluripotent stem cells and other progenitor cell populations to understand the cellular and molecular mechanisms by which fetal organs develop in disease.

Our lab projects can be broadly divided into three major areas: 1) fetal spinal cord regeneration 2) fetal lung development 3) esophageal regeneration

Lab members: Juan Biancotti, PhD (Instructor/lab manager); Annie Sescleifer, MD (postdoc surgical resident); Kyra Halbert-Elliott (med student), Ciaran Bubb (undergrad)

Recent publications:
Kunisaki SM, Jiang G, Biancotti JC, Ho KKY, Dye BR, Liu AP, Spence JR. Human induced pluripotent stem cell-derived lung organoids in an ex vivo model of congenital diaphragmatic hernia fetal lung. Stem Cells Translational Medicine 2021, PMID: 32949227

Biancotti JC, Walker KA, Jiang G, Di Bernardo J, Shea LD, Kunisaki SM. Hydrogel and neural progenitor cell delivery supports organotypic fetal spinal cord development in an ex vivo model of prenatal spina bifida repair. Journal of Tissue Engineering 2020, PMID: 32782773.

Kunisaki SM. Amniotic fluid stem cells for the treatment of surgical disorders in the fetus and neonate. Stem Cells Translational Medicine 2018, 7:767-773

Dr. Fridman's research group invents and develops bioelectronics for Neuroengineering and Medical Instrumentation applications. We develop innovative medical technology and we also conduct the necessary biological studies to understand how the technology could be effective and safe for people. Our lab is currently focused on developing the ""Safe Direct Current Stimulation"" technology, or SDCS. Unlike the currently available commercial neural prosthetic devices, such as cochlear implants, pacemakers, or Parkinson's deep brain stimulators that can only excite neurons, SDCS can excite, inhibit, and even sensitize them to input. This new technology opens a door to a wide range of applications that we are currently exploring along with device development: e.g. peripheral nerve stimulation for suppressing neuropathic pain, vestibular nerve stimulation to correct balance disorders, vagal nerve stimulation to suppress an asthma attack, and a host of other neuroprosthetic applications. Medical Instrumentation MouthLab is a ""tricorder"" device that we invented here in the Machine Biointerface Lab. The device currently obtains all vital signs within 60s: Pulse rate, breathing rate, temperature, blood pressure, blood oxygen saturation, electrocardiogram, and FEV1 (lung function) measurement. Because the device is in the mouth, it has access to saliva and to breath and we are focused now on expanding its capability to obtaining measures of dehydration and biomarkers that could be indicative of a wide range of internal disorders ranging from stress to kidney failure and even lung cancer.

The RISE Lab’s research focuses on developing and evaluating cellular/molecular imaging biosensors and drug/nanoparticle delivery systems for improved therapeutic indices in precision medicine.

The goal of research in the Beer Lab is to understand how gene regulatory information is encoded in genomic DNA sequence. Our work uses functional genomics DNase-seq, ChIP-seq, RNA-seq, and chromatin state data to computationally identify combinations of transcription factor binding sites that operate to define the activity of cell-type specific enhancers. We are currently focused on improving SVM methodology by including more general sequence features and constraints predicting the impact of SNPs on enhancer activity (delta-SVM) and GWAS association for specific diseases, experimentally assessing the predicted impact of regulatory element mutation in mammalian cells, systematically determining regulatory element logic from ENCODE human and mouse data, and using this sequence based regulatory code to assess common modes of regulatory element evolution and variation.

Dr. Borahay's lab focuses on understanding pathobiology, developing novel treatments, and carrying out high quality clinical trials for common gynecologic problems with a special focus on uterine fibroids. Our lab also investigates the causes and novel treatments for menstrual disorders such as heavy and irregular periods. In addition, Dr. Borahay’s team explores innovative approaches to minimally invasive gynecologic surgery, focusing on outpatient procedures with less pain and faster recovery times.

Researchers in the Laboratory for Fetal and Neonatal Organ Regeneration in the Department of Surgery at the Johns Hopkins School of Medicine are studying whether cellular reprogramming, stem cells, and ex vivo modeling can be applied to improve organ regeneration in pediatric surgical patients. To execute these aims, the lab collaborates with developmental biologists and biomedical engineers throughout the country and employs cutting-edge molecular strategies and pre-clinical animal models.

Research in the Quantitative Imaging Technologies lab — a component of the Imaging for Surgery, Therapy and Radiology (I-STAR) Lab — focuses on novel technologies to derive accurate structural and physiological measurements from medical images. Our team works on optimization of imaging systems and algorithms to support a variety of quantitative applications, with recent focus on orthopedics and bone health. For example, we have developed an ultra-high resolution imaging chain for an orthopedic CT system to enable in-vivo measurements of bone microstructure. Our interests also include automated methods to extract quantitative information from images, including anatomical and micro-structural measurements, and shape analysis.

Led by Drs. Nicholas Theodore and Amir Manbachi, the HEPIUS team unites neurosurgeons, biomedical engineers, scientists, radiologists and other physicians to treat and diagnose spinal cord injuries

Research in the Ruth Faden Lab focuses on biomedical ethics and health policy. Our specific areas of interest include justice theory; national and global challenges in learning health care systems, health-system design and priority setting; access global investments benefits in biomedical research; and ethical challenges in biomedical science and women’s health.

The Abadir Lab focuses on uncovering the molecular mechanisms underlying frailty, resilience, and age-related diseases to bridge the gap between basic science and clinical applications. Grounded in translational research, the lab investigates the intricate interplay between mitochondrial biology, the renin-angiotensin system (RAS), and chronic inflammation, with an emphasis on their roles in physical and cognitive decline.

Key Areas of Research

1. Mitochondrial and Angiotensin Biology
   • Discovery and exploration of the mitochondrial angiotensin system (MAS) as a critical regulator of cellular energy, inflammation, and resilience.
   • Investigating age-related mitochondrial dysfunction and its contribution to frailty, chronic inflammation, and neurodegeneration.
2. Biomarker Development
   • Identification of novel biomarkers for aging-related frailty and resilience, including cell-free DNA fragments and kynurenine metabolites.
   • Development of diagnostic tools for early detection of physical and cognitive decline.
3. Innovative Therapeutics and Bioengineering
   • Designing nano-delivery systems for targeted drug delivery to mitochondria, enhancing wound healing and reversing cellular senescence.
   • Integration of artificial intelligence and engineering to create advanced diagnostic tools for assessing frailty and aging-related conditions.
4. AI and Technology in Aging
   • Leveraging artificial intelligence and bioengineering to address challenges in geriatric medicine through collaborations with the Johns Hopkins AI & Technology Collaboratory for Aging Research (AITC) and the Gerotech Incubator Program.

Our Approach

The Abadir Lab employs a multidisciplinary methodology, combining molecular biology, bioinformatics, and engineering to tackle the pressing health challenges of aging populations. By fostering collaboration between clinicians, scientists, and engineers, the lab ensures that discoveries translate into tangible benefits for older adults.

Translational Impact

With a focus on frailty, inflammation, and cognitive decline, the Abadir Lab contributes to the development of personalized interventions and precision medicine approaches. Our work has laid the foundation for:

• Repurposing drugs like losartan and valsartan for treating aging-related chronic wounds.
• Unveiling the role of mitochondrial dysregulation in Alzheimer’s disease and frailty.
• Innovating tools for clinical assessments of resilience and functional decline.

Collaborations and Mentorship

The Abadir Lab is committed to training the next generation of scientists, fostering an interdisciplinary environment where students and postdocs explore cutting-edge aging science. Collaborations with the Johns Hopkins GeroTech Incubator Program and the Translational Aging Research Training Program (T32) further enrich this ecosystem of innovation.

Join Us

Whether you're a researcher, student, or collaborator, the Abadir Lab welcomes individuals passionate about transforming aging research into clinical practice.