ES title

DNA Isolation from Tails and ES Cells

1.   Prepare lysis buffer by diluting Proteinase K stock to 250 ug/ml (cells) or 500 ug/um (tails) in appropriate quantity of buffer (500ul per sample)
2.   Add 500-ul buffer to each tail sample or well of cells (this is for a 6-well plate, adjust to smaller or larger volume for other plate sizes).
3.   Incubate tail samples overnight at 37° C or cell samples 2 hours to overnight at 37 C.  Transfer cell samples to eppendorf tubes after incubation.
4.   Add 250 ul saturated (6M) NaCl to each tube.
5.   Vortex 2-5 min.
6.   Place on ice for 10 min.
7.   Spin 10 min. at low speed (9500 rpms on Eppendorf microcentrifuge)
8.   Carefully remove top 500 ul to fresh tube with 1 ml of 100% EtOH and mix by inversion.
9.   Centrifuge at high speed for 10 min. (14,000 rpm on Eppendorf microcentrifuge)
10. Remove supernatant by vacuum and wash with 70% EtOH 2X to remove salts (200 ul/wash).  Dry.
11. Resuspend in 50-100 ul of TE or H2O O/N at room temp.

 

Proteinase K Buffer                              per 50 mls                    Final Concentration
1 M Tris, pH 8                                     500 ul                           10 mM
5 M NaCl                                            1 ml                              100 mM
0.5 M EDTA, pH 8                              1 ml                              10 mM
10% SDS                                             2.5 ml                           0.5 %
H2O                                                     to 50 mls                                                     .  

Proteinase K: Final Concentration for 1. ES clones  250 ug/ml
                                                             2. Tails         500 ug/ml

 

 

 

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